PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01555.1.g00050.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 251aa    MW: 27970.5 Da    PI: 7.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01555.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-073887154
                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                    +++ ++erE+r Rd+ N+ f+eL ++l ++     + + Ka iL  +++ +k+L
  Zpz_sc01555.1.g00050.1.sm.mkhc 38 KKVHKSEREKRKRDKQNDLFDELGKMLEPD----RQNNGKACILSDTTRIVKDL 87
                                    678899**********************97....56677888888888777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-103596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-73593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6933787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-53887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-44092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVPRDKAHDG ADAAHPAPAE TLVQGPILNK KCEKKVPKKV HKSEREKRKR DKQNDLFDEL  60
GKMLEPDRQN NGKACILSDT TRIVKDLLSQ VALERNELFD ENNLIRNEIL GLKNELRMRL  120
EGSPIWTHGT ARSNLLLPHP GTQVFALQHS PHTPVIATMA LPQQQSAVLD PSYAAPRREL  180
QLFPETTATE DNERRPQDQG ISNHVTRPQA RYPTTTVTLP GHVYPVLPRM EDEHCSSGTT  240
GSGEEDGPGN A
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01555.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804247.11e-132transcription factor BHLH062-like
RefseqXP_025804248.11e-132transcription factor BHLH062-like
SwissprotQ69V103e-98BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A2S3H2P01e-131A0A2S3H2P0_9POAL; Uncharacterized protein
STRINGPavir.Ba00364.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-12bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]