PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01504.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 296aa    MW: 31033.6 Da    PI: 8.5557
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01504.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.53.8e-37153245192
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zpz_sc01504.1.g00050.1.am.mk 153 PCGACKFLRRKCVSGCIFAPYFDHEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 233
                                   7************************989***************************************************** PP

                        DUF260  81 lklqqqleqlka 92 
                                   ++lqqq e+++a
  Zpz_sc01504.1.g00050.1.am.mk 234 FALQQQCEKKHA 245
                                   *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.628152255IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-37153245IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MWVRETTQEL GHWQHSSGCS LFHVYTYALP SSVLFYIAIP PGPPPFFLSG LSPLQSRLPS  60
ASIPACLPAC LSEPADAALV LSLQLERPRP ASGGGSEEEQ AVIRCSLRER GRPGHVPERA  120
MSSGGGGTST LGAGGGPSGS GGPGGGGGGG GGPCGACKFL RRKCVSGCIF APYFDHEQGA  180
AHFAAVHKVF GASNVSKLLL QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQC  240
EKKHASPLNL ESCCLPACLP HPAVNTMHVS SAAAPSIAAI RRLHPSRHAH ITRERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-34149242799LOB family transfactor Ramosa2.1
5ly0_B4e-34149242799LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01504.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614311e-116BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-47LOB domain-containing protein 18