PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01484.1.g00020.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 144aa    MW: 15819.1 Da    PI: 10.3548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01484.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH535.9e-172571455
                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                     hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Zpz_sc01484.1.g00020.1.am.mkhc 25 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 71
                                    6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-201881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-211882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0632170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-172475No hitNo description
PfamPF000102.1E-142571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-182776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
GSEPDPTPAH PRGGSGSKRS RAAEVHNLSE KRRRSRINEK MKALQSLIPN SNKTDKASML  60
DEAIEYLKQL QLQVQMLSMR NGVYLNPPYL SGALEAVQAS QMFAAFGGGN ITASSSGQVL  120
LPIRKWLIGE TVVRYVPKQD DIVQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353601e-106BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankKJ7268601e-106KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658092.13e-64PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X2
SwissprotQ9FUA49e-39SPT_ARATH; Transcription factor SPATULA
TrEMBLB4FE228e-64B4FE22_MAIZE; BHLH transcription factor
TrEMBLQ0DEA76e-65Q0DEA7_ORYSJ; Os06g0164400 protein (Fragment)
STRINGGRMZM2G017349_P012e-63(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-40bHLH family protein