PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01414.1.g00110.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CAMTA

Protein Properties

Length: 435aa MW: 49247.3 Da PI: 6.1657

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01414.1.g00110.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	55.4	1.2e-17	52	95	74	117
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +vg+v++l+cyYah+e+np fqrrc+w+Le +e+ivlv+y++v Zpz_sc01414.1.g00110.1.sm.mkhc 52 RVGNVDALSCYYAHGEQNPCFQRRCFWMLEPVYEHIVLVQYRDV 95 699***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	25.216	1	101	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-19	10	96	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.4E-13	52	95	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:1.25.40.20	9.5E-4	126	175	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50096	7.602	236	265	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSESFDINVL REEARTRWLR PAEVYYILQN HERFPITPEP PKKPPSIAHI PRVGNVDALS 60 CYYAHGEQNP CFQRRCFWML EPVYEHIVLV QYRDVAESDS QFQQKLEYQP PGSLDSSDLR 120 IKLSAAKREK MVATILAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL AGYLSEVSLT 180 SHLASLTIEE SEISKGSAAV EAERAVESIS QRSAKRQGGT EDELSMKDSL AAVRNAAQAA 240 ARIQNAFRAF SFRKRQQKTA RLRDEYGMTQ EDIDELAAAA ASRSYHQNHA LNGQFYDKAA 300 AHVRGHQVRK KYKTFVSTVS VLEKVILRWR RRRQGLRGFR AEQPTMIVAE EEEEEDDDDV 360 DFEDDEATRM FRRQKVDEAL KEAVSRVLFM VESPEARMQY RRMLEEFRQA TAELGGSEVT 420 SLFNSELVGL DSFMH

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSESFDINVL REEARTRWLR PAEVYYILQN HERFPITPEP PKKPPSIAHI PRVGNVDALS  60
CYYAHGEQNP CFQRRCFWML EPVYEHIVLV QYRDVAESDS QFQQKLEYQP PGSLDSSDLR  120
IKLSAAKREK MVATILAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL AGYLSEVSLT  180
SHLASLTIEE SEISKGSAAV EAERAVESIS QRSAKRQGGT EDELSMKDSL AAVRNAAQAA  240
ARIQNAFRAF SFRKRQQKTA RLRDEYGMTQ EDIDELAAAA ASRSYHQNHA LNGQFYDKAA  300
AHVRGHQVRK KYKTFVSTVS VLEKVILRWR RRRQGLRGFR AEQPTMIVAE EEEEEDDDDV  360
DFEDDEATRM FRRQKVDEAL KEAVSRVLFM VESPEARMQY RRMLEEFRQA TAELGGSEVT  420
SLFNSELVGL DSFMH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975409.1	1e-129	PREDICTED: calmodulin-binding transcription activator 4 isoform X3
Refseq	XP_012703195.1	1e-129	PREDICTED: calmodulin-binding transcription activator 4 isoform X4
TrEMBL	A0A096SDH9	1e-169	A0A096SDH9_MAIZE; Uncharacterized protein
STRING	MLOC_58709.1	1e-128	(Hordeum vulgare)
STRING	Si009249m	1e-127	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6238	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	4e-45	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains