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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01414.1.g00110.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CAMTA | ||||||||
Protein Properties | Length: 435aa MW: 49247.3 Da PI: 6.1657 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 55.4 | 1.2e-17 | 52 | 95 | 74 | 117 |
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +vg+v++l+cyYah+e+np fqrrc+w+Le +e+ivlv+y++v Zpz_sc01414.1.g00110.1.sm.mkhc 52 RVGNVDALSCYYAHGEQNPCFQRRCFWMLEPVYEHIVLVQYRDV 95 699***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 25.216 | 1 | 101 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.7E-19 | 10 | 96 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.4E-13 | 52 | 95 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:1.25.40.20 | 9.5E-4 | 126 | 175 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50096 | 7.602 | 236 | 265 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MSESFDINVL REEARTRWLR PAEVYYILQN HERFPITPEP PKKPPSIAHI PRVGNVDALS 60 CYYAHGEQNP CFQRRCFWML EPVYEHIVLV QYRDVAESDS QFQQKLEYQP PGSLDSSDLR 120 IKLSAAKREK MVATILAAGA SATAVTDPTA QDPVGKTAAF LASERGHMGL AGYLSEVSLT 180 SHLASLTIEE SEISKGSAAV EAERAVESIS QRSAKRQGGT EDELSMKDSL AAVRNAAQAA 240 ARIQNAFRAF SFRKRQQKTA RLRDEYGMTQ EDIDELAAAA ASRSYHQNHA LNGQFYDKAA 300 AHVRGHQVRK KYKTFVSTVS VLEKVILRWR RRRQGLRGFR AEQPTMIVAE EEEEEDDDDV 360 DFEDDEATRM FRRQKVDEAL KEAVSRVLFM VESPEARMQY RRMLEEFRQA TAELGGSEVT 420 SLFNSELVGL DSFMH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975409.1 | 1e-129 | PREDICTED: calmodulin-binding transcription activator 4 isoform X3 | ||||
Refseq | XP_012703195.1 | 1e-129 | PREDICTED: calmodulin-binding transcription activator 4 isoform X4 | ||||
TrEMBL | A0A096SDH9 | 1e-169 | A0A096SDH9_MAIZE; Uncharacterized protein | ||||
STRING | MLOC_58709.1 | 1e-128 | (Hordeum vulgare) | ||||
STRING | Si009249m | 1e-127 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 4e-45 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |