PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01370.1.g00160.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 202aa    MW: 22468.4 Da    PI: 9.0192
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01370.1.g00160.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.7e-18159192134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+tt+TplWR+gp g+k+LCnaCG+++rk +
  Zpz_sc01370.1.g00160.1.sm.mk 159 CSDCHTTETPLWRSGPCGPKSLCNACGIRQRKAR 192
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-13150193No hitNo description
SMARTSM004012.4E-16153202IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.321157189IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-15157192IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.15E-13158186No hitNo description
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
PfamPF003208.8E-16159192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEGDQDQGLF PAFHIAKDPP ILFPFMINPV DQPNQGRSYG DQHLWQQVFA ESNQQFKDHL  60
MLGGSDVVFP TPSPFRPIIQ SIGSDMIHRS TYDPYDIENK HADGLTSRWA AAPPAKMKIM  120
RKPTSEYPQG GAARKPRRRA QAHQDESQQQ QATGVIRVCS DCHTTETPLW RSGPCGPKSL  180
CNACGIRQRK ARRAMAAAAA SN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01370.1.g00160.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951451.19e-99putative GATA transcription factor 22
RefseqXP_025795730.18e-99putative GATA transcription factor 22
SwissprotQ6YW482e-92CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VD771e-103A0A1E5VD77_9POAL; Uncharacterized protein
STRINGSi019058m5e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-16GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]