PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01350.1.g00230.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 379aa    MW: 41075.5 Da    PI: 10.1512
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01350.1.g00230.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1261109155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+ykGV   + +grW A+I++      r +r+++g+f  ++eAa+a++ a+++++g
  Zpz_sc01350.1.g00230.1.sm.mk  61 SKYKGVVPQP-NGRWGAQIYE------RhQRVWIGTFTGEDEAARAYDVAAQRFRG 109
                                   89****9888.8*********......44**********99*************98 PP

2B392.53.2e-29193298190
                                   EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltk 63 
                                   f+k+ tpsdv+k++rlv+pk++ae+h                  +g + +++ l +ed sg++W+++++y+++s++yvlt+
  Zpz_sc01350.1.g00230.1.sm.mk 193 FDKTVTPSDVGKLNRLVIPKQHAEKHfplhlpapaaaavdddvvSG-ECKGVLLNFEDVSGKVWRFRYSYWNSSQSYVLTR 272
                                   89***************************99988888888777522.34899***************************** PP

                                   THHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  64 GWkeFvkangLkegDfvvFkldgrsef 90 
                                   GW++Fvk++gL +gD v F++    ++
  Zpz_sc01350.1.g00230.1.sm.mk 273 GWSRFVKEKGLHAGDAVGFYRRA-AGK 298
                                   ********************533.444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-1661117IPR016177DNA-binding domain
CDDcd000182.65E-2361117No hitNo description
PfamPF008471.8E-861109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1962117IPR001471AP2/ERF domain
SMARTSM003809.2E-2562123IPR001471AP2/ERF domain
PROSITE profilePS5103219.88862117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-38188313IPR015300DNA-binding pseudobarrel domain
CDDcd100178.86E-28191302No hitNo description
SuperFamilySSF1019365.76E-29191298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337193308IPR003340B3 DNA binding domain
PfamPF023624.3E-26193300IPR003340B3 DNA binding domain
SMARTSM010192.4E-20193308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDSTSCLLDS ASSGASTGKK APAELIRTLQ RVGSGASAPG AEADSGGARR AAAAGGKLPS  60
SKYKGVVPQP NGRWGAQIYE RHQRVWIGTF TGEDEAARAY DVAAQRFRGR DAVTNFRPLA  120
DSDPDDAAEL RFLAARTKVE VVDMLRKHTY LDELAQNRRA FAAVAPPPSP STNGPADSSP  180
HPQPPSAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LHLPAPAAAA VDDDVVSGEC  240
KGVLLNFEDV SGKVWRFRYS YWNSSQSYVL TRGWSRFVKE KGLHAGDAVG FYRRAAGKQL  300
YIDCKVRSRK TSPPGPVKAV RLFGVDLLTS TPSPASAAAT LQEEMTTMAM KNKRPRDFIV  360
TSSTPHMFFK KQCVDLALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4719030811118DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01350.1.g00230.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-166Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A3L6SXE90.0A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein
STRINGSi024576m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-106related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]