PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01308.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 359aa    MW: 39664.5 Da    PI: 9.347
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01308.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.9e-1268117156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a + a+++++g+
  Zpz_sc01308.1.g00040.1.am.mk  68 SRYKGVVPQP-KGRWGAQIYE------RhARVWLGTFPDEEAAARAFDVAARRFRGH 117
                                   78****9888.7*********......44*************************997 PP

2B377.41.6e-24181276183
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 
                                   f+k+ tpsdv++++rlv+pk +ae+h        + + + ++ l +ed +      ++W+++++y+ +s++yvlt+GW++F
  Zpz_sc01308.1.g00040.1.am.mk 181 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 261
                                   89****************************99996667899999999965455888************************* PP

                                   HHHHT--TT-EEEEE CS
                            B3  69 vkangLkegDfvvFk 83 
                                   v+++gL +gD+++F+
  Zpz_sc01308.1.g00040.1.am.mk 262 VREKGLAAGDTITFS 276
                                   **************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1668124IPR016177DNA-binding domain
PfamPF008479.7E-768117IPR001471AP2/ERF domain
CDDcd000182.33E-1168124No hitNo description
PROSITE profilePS5103220.78469124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2069124IPR001471AP2/ERF domain
SMARTSM003807.8E-2369130IPR001471AP2/ERF domain
PRINTSPR003679.6E-57081IPR001471AP2/ERF domain
PRINTSPR003679.6E-590106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.5E-33173278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-26176276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-24179275No hitNo description
SMARTSM010199.1E-16181290IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633181292IPR003340B3 DNA binding domain
PfamPF023622.8E-21181276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MLTLASWHRE HQSMYGWLYH KHQRRRSRSS PLFHHFPLCR RTAMSTPSST QEEAQRAGMV  60
ASQAAPASRY KGVVPQPKGR WGAQIYERHA RVWLGTFPDE EAAARAFDVA ARRFRGHDAA  120
VNFPGPADAD ELAFLAARPK AEVVDMLRKH TYDDELRQGL RSVSGGGGVC EADPVPRTPL  180
FEKAVTPSDV GRLNRLVVPK VHAEKHFPPL SEKDDDDDAA PVLLAFEDAD PNGGNGKVWR  240
FRFSYWSSSQ SYVLTRGWSR FVREKGLAAG DTITFSQATT PPTPTTTSAD GEAYTARRLF  300
IECRKRKRTR TDSDGSVVVD GCPDHGGDAR VVRLFGANIA AAIGGHAFVE VEPQLQVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3718027913104DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01308.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-113AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS75e-92Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A3L6R5X11e-116A0A3L6R5X1_PANMI; Uncharacterized protein
STRINGTraes_3B_68BFA25F1.11e-99(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-75related to ABI3/VP1 1