PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01260.1.g00040.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 371aa    MW: 39163.7 Da    PI: 10.3147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01260.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.35.9e-29153254197
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++Cvl+p++     +++q +++ +++k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+
  Zpz_sc01260.1.g00040.1.sm.mkhc 153 SCNGCRVLRKGCSEECVLRPCLqwietAEAQGHATVFIAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVS 231
                                     6*********************9999777889*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelall 97 
                                     Gavg++ +++++l+q+++e++l+
  Zpz_sc01260.1.g00040.1.sm.mkhc 232 GAVGLLGSGSWHLCQAAVETVLR 254
                                     *****************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.089152258IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-24153252IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MCGSTPPAKA RERVARRGTP KRATTGRTRG ASPEASPAIR SLSDGRPPLR PNAETRSRPP  60
HPWSLELSED FAASRAASLT HVHMGLPHPT PWLVRGPSIR ALGLAEPIYS LPGSPWPKLE  120
GLHARAKLGC CMRGCGSGAW TRVGALGTTT AMSCNGCRVL RKGCSEECVL RPCLQWIETA  180
EAQGHATVFI AKFFGRAGLM SFLTAVPEPQ RPAVFQSLLY EAAGRTINPV SGAVGLLGSG  240
SWHLCQAAVE TVLRGGGIHP LPEFDGGLHG ATADGREQFA FTARRPVGCS TFSAAKRATT  300
TTTTRIAAPH GAVAEPSCDL GLWLSPESPP APGDRRRRRP GTPSMTSEES VTTTTTTSSG  360
GRGPELLNLF V
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01260.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698131e-126AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-113LOB domain-containing protein 37
SwissprotQ9FN111e-66LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK3ZWM91e-112K3ZWM9_SETIT; Uncharacterized protein
STRINGSi031011m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-57LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]