PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01229.1.g00050.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 537aa    MW: 55689.8 Da    PI: 6.8031
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01229.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.93.7e-34183277282
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 
                                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l  +               + 
  Zpz_sc01229.1.g00050.1.sm.mk 183 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDRLEVLpawqptatatnaaaAAA 263
                                   79**************************************************************66554443333222111 PP

                           TCP  69 saseceaesssssa 82 
                                   ++s++ ++s ++s+
  Zpz_sc01229.1.g00050.1.sm.mk 264 PSSSTHPDSAENSD 277
                                   11111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-31183280IPR005333Transcription factor, TCP
PROSITE profilePS5136933.211185243IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQQQQH QRLLQLHQEG  60
QDQEPPSVPV FQLQHMQAAA LRQPASSAEY ALLAPMGDAG QSHHHHHGFQ PQLLSFGGVG  120
QHHQLHQFTA QAPAAGSASH SRSRAAAAGG GGGGEIVPAS QSRVRSGGGE IVAVQGGHIV  180
RSTGRKDRHS KVCTARGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKEAI  240
DRLEVLPAWQ PTATATNAAA AAAPSSSTHP DSAENSDDQA QAITVAHTGF DFPSGAAGAS  300
GGGGTGFLPS SLDSDSIADT IKSFFPMGGT GGGEASSSTA GAQSSAMSFQ SYTPDLLSRT  360
GGHSQELRLS LQSLPDPPMF QHQHPQPEHD RSHGHGSSQQ ALFPGAGSYS FGGGAMWGAE  420
PAQSQRLVPW NVPDPGGGYL FNVSQQAAHM QAALGGQSQF LFQRGPLQSS NQPSDRGWPE  480
TVEADNPMSA IGFAPGVGFS GFRIPARMQG EEEHNGGGGG SGEKPPPPPS VSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-20190243154Putative transcription factor PCF6
5zkt_B3e-20190243154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01229.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-64TCP family protein