PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01141.1.g00100.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 701aa    MW: 77129.8 Da    PI: 10.7238
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01141.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05258282123
                                   EEETTTTEEESSHHHHHHHHHH..T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                                   +kC  C + F+r ++L+ H+rt  H
  Zpz_sc01141.1.g00100.1.am.mk 258 HKCAACFRQFNRMEHLVEHMRTarH 282
                                   79*******************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.05258287IPR007087Zinc finger, C2H2
PROSITE patternPS000280260282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.101.2E-27373534IPR012337Ribonuclease H-like domain
SMARTSM004791.6E-12373533IPR013520Exonuclease, RNase T/DNA polymerase III
SuperFamilySSF530981.52E-15379528IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MTPLQLSILT KNQRQLKEPY NTTESKDKNS GRSGVADHGC RAVASSSLCA SWRRPCKLGA  60
VNPSGGRSRQ RDEGPRASPP HVDTRVALAL SLRDRLIAIG KATRTRTHEQ QLDICRVPIW  120
MHPATAAGSG DRDGGKARRG MFTAYPARNR SARANDLAAG RRRPGLFVSA FGRGSHLNLL  180
HLKKSSRRWQ RATHCRKTQK GQQPCCQWVT RRCGAEHRCK RHLSNRLPRE NRSRARRPAG  240
CCPPINWHPC AALRCRRHKC AACFRQFNRM EHLVEHMRTA RHSAHEPRCD VCFKRRRSFE  300
ALRDHLGAGG SSLPNSAHCA TVFAARGCTL CLGVFPTAAR LSEHRAHCQL SRTTTPTLLS  360
MSRLQIGGQG GGGALALGCK MVGAGSDGSL DVCARVCLVD ERESVVFETF VKPLVPVTHY  420
RYERTGIRPE HLRACGVTVK QAQELVQEFL LNGEQPWKVR TSRGRARVLV GHGLDHDLDA  480
LGFDYPAYLK RDTATFLTRT YLGYDIQTGH QHPDEDCVAA MRLYQRMRAL PHRKGDGEGA  540
AAGAVTASAV DNAFPAWRQR ELERMTPEEL LQLSTPDYYC CATELVRPEV PPDGGTLRRL  600
TAAPPPHLAE AEAARHHGPP PSGGPFPRQR SHQAAPSPDG KLDGGALRRP PSPTANLHYC  660
SRRRQATTAP PDGGPSPDGR PPRPLPTAAP PPHLAATAKH P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9478612e-52EU947861.1 Zea mays clone 363790 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP214655