PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01093.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 358aa    MW: 37967.2 Da    PI: 8.9266
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01093.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.6e-17177210134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR gp g+k+LCnaCG+++rk +
  Zpz_sc01093.1.g00030.1.am.mk 177 CSDCHTTKTPLWRTGPCGPKSLCNACGIRQRKAR 210
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-13169211No hitNo description
SMARTSM004012.4E-16171223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.321175207IPR000679Zinc finger, GATA-type
CDDcd002028.05E-14176213No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003208.5E-15177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSAIYMSQFS TGLLMEGDHH QDHYHQGHFQ PFTLPKDPPI LFPFMIGNSS ASDSSLSYGS  60
PDHHLIRQQQ AMLEPQHMIG GSAAASAFAT PFPTVESIRD DMIEPSSFDP YDMGRLQVGR  120
SIEAAGGNWT PPAKMRITRK ASADPGAGGV AVKKPRRRAQ AYEDMSSQPN LGVIRVCSDC  180
HTTKTPLWRT GPCGPKSLCN ACGIRQRKAR RAMMASAGAV SADGVKAATA TASDATTVHP  240
KEKKEKRADV DRPLPFKKRC KVVQDHAAAV AAPLASAGKG AGVQATTAEV SDAGLGRDLV  300
DNIGLISWSR PNPAQPAAAA TTACSSFRSA PAPLPVQHDE ITDAAMLLMT LSCGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01093.1.g00030.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698513e-46AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-160putative GATA transcription factor 22
SwissprotQ6YW484e-70CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VZ481e-166A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-18GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]