PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01076.1.g00060.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 336aa    MW: 36094.3 Da    PI: 5.9318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01076.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10132176655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Zpz_sc01076.1.g00060.1.sm.mk 132 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 176
                                   568*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-15123192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-13123176No hitNo description
PROSITE profilePS5088815.129126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-8132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDHDLLRLLQ LPSQDHLMVN SGFFSVAGGA AVDVHVPNSD DAGFVGPAAA LAGLDDCGWM  60
EDLMHLGDEL FVGDDNNAGG TREYQPSLCG DGSPEDPPPS VSLDGGEGSP PSVEQDDGSA  120
ATRKRRDRSK TIVSERKRRV RMKEKLYELR ALVPNITKMD KASIIADAVV YVKNLQSHAR  180
KLKEEVATLE ATPRSPAGHH HQQQQQKQHA AAGRRQQNRD GPPADDEEKS TGPAGARVTH  240
VGAAQVGHGR FCVTVECERR DGVAAPLCSA VESLACFRVE SSSLGRSGPD RIVSTHVLKA  300
SDQLGDATIG ERTVRLWMMA ALLKEGFQPE ATVEIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123138KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01076.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350404e-70CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-130transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK61e-130A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-42FER-like regulator of iron uptake