PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01006.1.g00060.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 684aa    MW: 72173.7 Da    PI: 5.0774
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01006.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10288344155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Zpz_sc01006.1.g00060.1.sm.mk 288 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 344
                                   57*******************5444.2455535555.7799999*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-14288353IPR016177DNA-binding domain
PfamPF008473.7E-8288344IPR001471AP2/ERF domain
CDDcd000181.32E-16288353No hitNo description
PROSITE profilePS5103217.108289352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-11289352IPR001471AP2/ERF domain
SMARTSM003803.3E-18289358IPR001471AP2/ERF domain
PRINTSPR003673.6E-6290301IPR001471AP2/ERF domain
SMARTSM003806.5E-4359403IPR001471AP2/ERF domain
PROSITE profilePS510328.755371397IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-5372399IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-6372398IPR001471AP2/ERF domain
PRINTSPR003673.6E-6379399IPR001471AP2/ERF domain
PROSITE profilePS510328.966386448IPR001471AP2/ERF domain
SMARTSM003800.0023413454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-6423449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENAQP NQDTSSAIDI SGGSDFYGLP AQQASDGHIG VDHASYGIME  60
AFNRGPQETQ GEETAARQPL YRLMICSAYD WNLRGMDYNG GASELSMLVG SSGGGGSGKR  120
AVEESEPKLE DFLGGNSFVS EQDQSGGYLF SGIPMASSTN SNSGSNTMEL SMIKTWLRNN  180
QVPQPQPPAP HQPQPEEMST DASANSFGCS DSQGRNGTVA TGSSQSLALS MSTGSHLPMV  240
VGGGTASGAA SESTSSENKR ANGAMDSPGG AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG  300
RYEAHLWDNS CRREGQSRKG RQGGYDKEDK AARAYDLAAL KYWGTTTTTN FPYCIAQTPP  360
AWEMASKDRE STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPVGGAARR  420
LKDAEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILES STLPVGGAAR RLKDAVDHPE  480
AGATIWRAGM DGGVISQLTD AGLGSYASYH HHGWPTIAFQ QPSPLSVHYP YGQPSRGWCK  540
PEQDAAVAAA AHSLQDLQQI HLGSTAHNFF QASSSSTVYN GGGATGYQGL GGSSFLMPSS  600
TVVADQGHSS TANQGSTCSY GDEEGRLIGY DAMVASAGGD PYAAARGGYQ FSTSQGSAAS  660
TVSIARANGY ANNWSSSFNA NGMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01006.1.g00060.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147535.10.0protein BABY BOOM 1
TrEMBLB6SSL70.0B6SSL7_MAIZE; Protein BABY BOOM 1
STRINGGRMZM2G366434_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-63AP2 family protein