PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00999.1.g00170.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 470aa    MW: 50239.1 Da    PI: 5.0166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00999.1.g00170.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-11320365555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     h+++Er RR++i +++  L++l+P++      K +Ka+ L + ++Y+k Lq
  Zpz_sc00999.1.g00170.1.am.mkhc 320 HSIAERLRREKISDRMKDLQDLVPNS-----NKADKASRLDEIIDYVKFLQ 365
                                     99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16313376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-12313369No hitNo description
PROSITE profilePS5088816.437315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15317374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8320365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-11321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MENSSGSYLS SWPAPESYSS AAGSVESYAG EGNMPPSSYF MNAISDHSLK FNDQEQNSTL  60
LSNGCLAYSA QADLLSGEIL SKDKLTSNLM EVQQLQSRSN QQSNLVNQGV FQKNSTPEIF  120
YPQLDTPRFA ELPQTLSSSI DSNGIGVSAF LTGIHAVSSA STFCSTYENC SSFMEPVNIE  180
AYSFGAQNDV MLNKTDHPSG NTSAFGNSAS ATLIDGKDFI SGRLPSFATI HETNLPASGF  240
KAQKQEQNAI SDVPIPTAIG PMAVTAKQGT LIPPKMPSWT NDNKSEGPVS PPGVQPKANG  300
NGVGVKPRAR ARRGQATDPH SIAERLRREK ISDRMKDLQD LVPNSNKADK ASRLDEIIDY  360
VKFLQLQVKV LSMSRLGAPG AILPLLSESQ IEGYCGQPLS APTTPHGQPD AQDSEDTLAF  420
EQEVGKLMET SITSAMQYLQ NKGLCLMPVA LASSISNQKG TAAAAVPTQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00999.1.g00170.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438003.10.0transcription factor bHLH66 isoform X2
TrEMBLA0A3L6DEA70.0A0A3L6DEA7_MAIZE; Transcription factor bHLH82
STRINGSb10g006250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-57LJRHL1-like 3