PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00981.1.g00030.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 303aa    MW: 32604.4 Da    PI: 8.4158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00981.1.g00030.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000171972341355
                                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     R+ i +++ eLrel+P+ a      K s  + Lek+v+++  Lq
  Zpz_sc00981.1.g00030.1.sm.mkhc 197 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 234
                                     67799************66......999999********99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-286151IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.64E-4178234No hitNo description
PROSITE profilePS5088810.487184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-5197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-5197240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVGDALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHPSCPAGSE PTEILPAEVG  60
CSAAADGTMC SLVKKVMASQ VHVVGEGTVG RAAFTGNHQW IVHGAANGHG LSSSEVAAEM  120
NDQFKAGIQT IAIIPVLPRG VLQLGSTGLI RLWIESGQNL KCESVSASNS KGLDTPSKTS  180
RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVMKHA  240
DKLRHSTESK ANRDVTRMEI FLSLVRLLEP NCDGSGAAEN ANIINRPLGL VHQPVIPATG  300
RIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00981.1.g00030.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827940.11e-84transcription factor LHW-like
RefseqXP_025877378.11e-84transcription factor LHW isoform X2
TrEMBLA0A2T7CK759e-84A0A2T7CK75_9POAL; Uncharacterized protein
TrEMBLA0A3L6PKE51e-83A0A3L6PKE5_PANMI; Transcription factor LHW-like
TrEMBLI1QXV95e-87I1QXV9_ORYGL; Uncharacterized protein
STRINGPavir.Hb01911.1.p1e-83(Panicum virgatum)
STRINGOPUNC11G03540.11e-83(Oryza punctata)
STRINGORGLA11G0035100.18e-88(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.33e-33conserved peptide upstream open reading frame 7