PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00969.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 362aa    MW: 39059.6 Da    PI: 10.226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00969.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-057597123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++C++ F++   L  H+++H
  Zpz_sc00969.1.g00050.1.am.mk 75 YTCGYCKREFRSAQALGGHMNVH 97
                                  9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-574102No hitNo description
PfamPF139122.8E-67598IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.09475102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSLSLPRNGE RCSDGILADK VDYSHNTLPA MERDHGRGLK HQHQQQQVAW TPGHNFGLSG  60
CFSWPAVPQP LSSSYTCGYC KREFRSAQAL GGHMNVHRRD RARLRQCCPA YAPSPNLIAA  120
HHRRAAAVGP PLPNLNFVPP HCAGATTAEP AVYSFFSTTT TSAMKAAVQV NLELGISGGV  180
CGHDGAVPEE GGLDLELRLG CPLDGGNKNH DVRTFPCSRW QRGPCKKKLR LSGARSLPHA  240
AAQGRRRPAS GRSEKIRLLG LGAHVAHHCR LLDRLIYEVP RHHRNLAISE LCHVIGVPSS  300
RQMKFSFNRH PPCPRPSLVP VRTPPYPTSA TSAAVILAPT NGGAGGRGAT GPLPPPLSIE  360
IF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591938e-38EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447484.11e-34hypothetical protein SORBIDRAFT_06g001730
TrEMBLK3YC536e-54K3YC53_SETIT; Uncharacterized protein
STRINGSi011797m2e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.19e-16C2H2 family protein