PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00901.1.g00130.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 152aa    MW: 17260.8 Da    PI: 8.6296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00901.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000263558123
                                    EEETTTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                    +kC+ C+k  s+ s +  H    H
  Zpz_sc00901.1.g00130.1.sm.mkhc 35 FKCHVCHKKLSTASGMAIHVLQvH 58
                                    89****************987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.021665IPR003656Zinc finger, BED-type
SuperFamilySSF576673.77E-51160No hitNo description
SMARTSM003552.81134IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.13558IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGKKKKRVDK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM AIHVLQVHKE  60
SVTKVPNAKP GRESTEIEIF GMQGIPADVL AAHYGEEEDP SSKVAKVEVP QEERRLSLPK  120
YQVHDETSQM NSVDAAIDRR ISESRLAGRM AL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679971e-132AK067997.1 Oryza sativa Japonica Group cDNA clone:J013127D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136975.19e-75uncharacterized protein LOC100217135
SwissprotQ9C5G03e-65SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A096R8D86e-75A0A096R8D8_MAIZE; Uncharacterized protein
TrEMBLB4FLK41e-74B4FLK4_MAIZE; Uncharacterized protein
STRINGGRMZM2G081812_P014e-74(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63551318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.12e-66C2H2 family protein