PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00876.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 347aa    MW: 36442.9 Da    PI: 8.2114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00876.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09234275955
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Zpz_sc00876.1.g00010.1.am.mk 234 AKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 275
                                   589*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.272225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-12226283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-12227286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-11227279No hitNo description
SMARTSM003532.7E-10231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-6235275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MWAPVCRGGS LARRALITAS KRDTAAAVVP RAPQLRPVMY DDEPSSMSLE LFGYHHGVVV  60
DGDHDVDSGA ALPAGDLQLA FDDNFKGGGG CDPADYYSWA SYGGGGSGAS SSSSSSVLSF  120
EQAGNGGRHL AAYSTGAGGS DDCAIWMDAA AAGMVDHPAA CNFGFVSPGG SADHAGREIQ  180
ELGSVQPQAK AAQKRARPVG EVQAAAGKKQ CGSSRKTKAK AAAPPTKDPQ SVAAKVRRER  240
IAEKLKILQD LVPNGTKVDL VTMLEKAITY VKFLQLQVKV LAADEFWPAQ GGKAPELSQV  300
KDALDAILAS QHSTWVGEVA ALEGRKEPTR KRWGRGPWAA KDERVSW
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00876.1.g00010.1.am.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455315.11e-118transcription factor bHLH69
TrEMBLA0A1E5W9541e-122A0A1E5W954_9POAL; Transcription factor bHLH83
STRINGSb03g008290.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-45ROOT HAIR DEFECTIVE6