PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00841.1.g00130.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 301aa    MW: 32155.9 Da    PI: 7.1774
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00841.1.g00130.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-304107199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C ++C ++p++     pa+q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +P+yG+
  Zpz_sc00841.1.g00130.1.sm.mk   4 SCNGCRVLRKGCGDSCSIRPCLqwiksPAAQSNATVFLAKFYGRAGLLNLVNAAPQHLRPAVFRSLLYEACGRIVNPIYGS 84 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   vg++++++++++q+++e++l ++
  Zpz_sc00841.1.g00130.1.sm.mk  85 VGLLWSGNWNMCQAAVEAVLKGA 107
                                   *****************998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3793109IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCGDSCS IRPCLQWIKS PAAQSNATVF LAKFYGRAGL LNLVNAAPQH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GNWNMCQAAV EAVLKGAPIV KISSDEAAAD  120
TPSPAHLHKA AYDIRHVAAS SSSDKPGRLK KRTSASSAAT AAATTTTARS NKKSKKAAPD  180
DDHQQQQVST ASDHHHLHVV EPMDSDDAEA AGSHVSQAEQ STHSEREAEQ SIHNERESEQ  240
STHDEQQIEE KPQGQLGLDL TLGFVPIPAP CVPRPAPDAG DAGCSITGTG WTAHEPAFRF  300
L
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00841.1.g00130.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568012.12e-86LOB domain-containing protein 41
TrEMBLF2DDE67e-89F2DDE6_HORVV; Predicted protein
STRINGMLOC_58304.11e-89(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-73LOB domain-containing protein 41