PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00818.1.g00080.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 263aa    MW: 28360.4 Da    PI: 8.3857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00818.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14111162155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+ +N+ ++ Lr l+P++   + ++ + a+++  A++Y+k+L+
  Zpz_sc00818.1.g00080.1.sm.mk 111 QRMTHIAVERNRRRLMNDHLASLRALIPPS---YIPRGDQATVVGGAIDYVKQLE 162
                                   79****************************...9*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-13109165No hitNo description
Gene3DG3DSA:4.10.280.107.6E-14109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.072110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVVMEQWADH QAVSTSAATA QMPFLALLQG AVVENDDDGL RKRAASFAAC AAAADLDLFE  60
SCVTQAAAVT VASSAAPATR ADSRRRKRPR PRPRAAPQQE KRKKPEEAES QRMTHIAVER  120
NRRRLMNDHL ASLRALIPPS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA EAAXXXXEAT  180
GAVGGHVRVR VAGRRWPGRL VRAVAALEDL RLAVLHLAVT SVGHDAVVYC FNLKMEDGCE  240
VATADEVATV VHQIFAYAAG TCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18393RRRKRPRPRPR
28591RKRPRPR
385103RKRPRPRPRAAPQQEKRKK
48690KRPRP
5111122RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00818.1.g00080.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554702e-81AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.11e-105transcription factor bHLH57-like
SwissprotQ9M1285e-50BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A1D6PKX51e-118A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGSi040271m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.22e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]