PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00801.1.g00080.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 650aa    MW: 70901.3 Da    PI: 9.8555
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00801.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.55e-34352432383
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 
                                    ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +             s     
  Zpz_sc00801.1.g00080.1.am.mk 352 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 427
                                   689*********************************************************9995555443322111..... PP

                           TCP  72 eceaesssssas 83 
                                    +       +++
  Zpz_sc00801.1.g00080.1.am.mk 428 -S------PMSA 432
                                   .1......1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.922353411IPR017887Transcription factor TCP subgroup
PfamPF036345.8E-33353433IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MRRRSLMASS CSPHGRPADA NTAMDELSLG VIRWQAHEIL ASPAAPSRTS SANMTDGRLA  60
RARVWSLNVV ARSSPSHLEI ECLDSGATEK PTMAACRNGK GESKKQPKDR HPPAAPAVKM  120
IQRMVRAMSR FEGRQGTTAL APSCAAMPSI DRDEQCVCVL ARTWPLLLVS LQLICRTGGG  180
GGLAGRGCSP CPTCTRQWRW TRHSLDPKIC SSTCERSCER GSGRGQEIAA AAAQELARSR  240
SPLSLGSLQM LPYPNPHHFG ISQEQPHPNP ATAGFPMGPP VVHPDQQHYD HHFFPGHAHY  300
FNSETLEAVL RPPRAASERE VVGVMPVPQG ASRNSVAGAG GQGNARARKR PFRTDRHSKI  360
RTAQGVRDRR MRLSLDVARD FFALQDRLGF DKASKTVDWL LTQSKPAIDR LSEPTHRGSG  420
SGDAAMSSPM SAEIVKETAA AGSGKGSVEK TASRNSSFMD HSCELDRLVS AAPVLGEYYY  480
EFGEMMGSNE GEGDDDGEYD EDGHLSARER APLPFEKERE KPGLPLLRPR TAEGICVESA  540
TRRRPAYITA ADGRREQPYL ASGRAGYSAA TCVGSAPYFR VPGRRARSCM LACSARGRRS  600
QTADRFVSEM NLPVDRFYPP LARALSIYFR RVAARIVRSA VDHTKLLKLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00801.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786206e-83KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786216e-83KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786226e-83KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.18e-25TCP family protein