PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00728.1.g00130.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 876aa    MW: 95473.5 Da    PI: 5.5337
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00728.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.4e-2484174189
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwev 78 
                                   +fYneYA+++GF  r+ +s++sk ++e+ ++++fvCs+eg  ++++ +  + +++r+r++ r gC+a+++v +e +++w+v
  Zpz_sc00728.1.g00130.1.am.mk  84 QFYNEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHWVV 163
                                   6*********************8777652789********98887766557888999***************99.9***** PP

                          FAR1  79 tkleleHnHel 89 
                                   +kle+ HnH l
  Zpz_sc00728.1.g00130.1.am.mk 164 SKLEKAHNHGL 174
                                   *********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2184174IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MEGARSEGDE LIADYVDCLM SLDTSARSHQ NDSIVLGDSI VEGAPSLSVG GAAEPEVMKD  60
FALGDDPNEP VLGMVFESDE AAKQFYNEYA RRLGFPFRVG RSRRSKGTEE VLVMKRFVCS  120
REGMYKKKQP SSDDATRKRE RVSMRDGCNA MMEVVRESDH WVVSKLEKAH NHGLGTCTKV  180
GYLRARVRST SPSARSTSRL NPEAASFTIG RRSTELPSGK STPSWLNFSI SPSSSSDGRS  240
SPTSIGPQSP HPPLRSYCQV AQVAREGRPA CAQGPRVRRP DLPPPKSDLP PPKQGPSVAG  300
DWEVMHHRRW CRVHCAPPPP HQAQVARPVP PDLRPSSRQF TGGEVGQVTG GGGGVQPASR  360
RLGRLRLPRL RVPHRVSWWL PPLGRRLNQR PLRPLAPPLS SSLRFQGPTS ITPTMDAAED  420
ELARALVAMV VGTRPAVSVP RVKRHLREHF GVAEEEVQVR RFWPEDFLIV FADIEAASAV  480
LHAPPPMDVF LEIENLPAHA WDLETAQTIV GSSCTILAVF PESLSKASMS SFKLIAWCVD  540
PNLIPEVVDV LILEKPEMPV PNNLFLHPEE LIFHLWDALH YSTVIRLIEV QDFHTLSSSD  600
DDSDDWSGDG EDSDSEGGDG LPVLVVATSS AGHRGFAVRT GACCLGGAAP TASGFLRPSF  660
AAGRKFVPTP DFWDPMFLEA ALPPEWATVP ISPSVERGDE TTGAPTSLVE EHEFLGCLSD  720
SLPPNEAGLS SLAPPEVQLS LPDEPRSVAD FAADPACQFT LEEAAACTTG PYLSSSTEQP  780
HCKQNSCSHT GACSSTERTY EKARIISENA APDADAVVQY EQLFVNGLSE QQMQALTELF  840
PDHVSAQAQA EYLEVVRDAW HCPLVGANPF QRPPKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00728.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-19FAR1 family protein