PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00713.1.g00110.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 458aa    MW: 49977.3 Da    PI: 11.0596
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00713.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.31.1e-13272339369
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69 
                                   +q+ ws+ De +lL + +df+++tg  p   d+ +++e + +sis ++ +  +  K++rLK Kf++  
  Zpz_sc00713.1.g00110.1.am.mk 272 AQKHWSDADEFTLLNAALDFRKRTGRVPRLpDMAKLFESITDSISPEIDQWMVYYKLKRLKSKFQHTD 339
                                   6899**********************77766*********************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-11273339IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSAGAPRRRR RRRGRPPTRY NDGGAADLGL GFRLEQPRRP SLFFLPRVLF PREFSRPEFF  60
AWVSDPVGRQ DGGGSVGCPG FHNPASRVHA TKSQSARRCP SPRHAERTPQ PSPRHAAPMS  120
TERSAASAMD ADAEPSPPSP PRSKKPASRT GDGQSSPNPS PGGSPAGRSD QKRRRLRTSA  180
ESAALALASV AAHASAANVD ADANRAAAKR RGPAGVRVDE GHGAIQMLGA AAARVDKGQT  240
DVQKHGPAEG PVTRGRAAGH KPWTAYASRG AAQKHWSDAD EFTLLNAALD FRKRTGRVPR  300
LPDMAKLFES ITDSISPEID QWMVYYKLKR LKSKFQHTDG PSDRRLRDLC ADLWGVVPPN  360
DISDGETDSD ERRAAPDAAA MMPVVAEVLG EYWRMNARAM ERVPLEKGLS RLGKKQGRLM  420
ETKWRQQLDE EMQTQMRRHD LAKEVCSLLS GAIKGLGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612RRRRRRR
2714RRRRRRGR
3171175KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00713.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954046.21e-114uncharacterized protein LOC101785158
TrEMBLA0A0A8YJH91e-119A0A0A8YJH9_ARUDO; Uncharacterized protein
STRINGSi017925m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00238.11e-06DNA-binding storekeeper protein-related transcriptional regulator