PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00686.1.g00210.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 713aa    MW: 76614.8 Da    PI: 10.7004
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00686.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.9e-343204789131
                           TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasn 84 
                                   +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++     +    sss+s+
  Zpz_sc00686.1.g00210.1.am.mk 320 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapS---TSSSSSH 397
                                   89*******************************************************99999444332221...2222221 PP

                           TCP  85 sssg..........................kaaksaa.kskksqksaasalnlakesr.......akarararertrekmr 131
                                    +++                          +a +++a   ++ +++aa+   +a+ ++       + a  ra+e+tr+++ 
  Zpz_sc00686.1.g00210.1.am.mk 398 YQQSvlgkrpreegdatvaaasafwaalpsAAPRTEAwGFSPLEAQAATYVPMAQAHHlnllaalSGAARRAEEETRQEHY 478
                                   112244567777788888888888888887333333335555555555555555555566666666677777777777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-30318412IPR005333Transcription factor, TCP
PROSITE profilePS5136927.009319373IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSNRSALCEP IPYRGAICGC SMTDWNDAVR TVKSQHLRTG SHADIPLLAN EVTETFADGG  60
TGSLQLYAES ELATQSSSSK TRKGWWPVHS PLPFQHRSSI FIRWRWLDRS RQNVDTRTWS  120
PAACGHPTVR AYVPVAPVTV RLAAPTLAST HGGSGTARRR PFRGATWRTP SPSMRSWAPA  180
NSAQPPAARP ITRCPLPGSF SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALAC  240
LPCLALSTVA PQVHTSTSRQ RYETGAMPTR DVSTAAAAMF HVYQPAQIPS TAAPATAATD  300
GTVAVPTSTQ GKKKSAQGGK DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE  360
WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSSHYQQ SVLGKRPREE GDATVAAASA  420
FWAALPSAAP RTEAWGFSPL EAQAATYVPM AQAHHLNLLA ALSGAARRAE EETRQEHYYY  480
NRASVKGQQS VQSCWPMATQ AADEQITAMI TPGNPRTIPF RPRRSLFLAF PRNRFEGKGN  540
GGQKAAAPAA RTTAVLPPAA RLWKLCQCER RKGRGRCVCA RANPVRLRVT PGGNFVSASE  600
LLPVLVRCIY LSALSSRAAY RLRTDVRVSF TVYGAAVAAA ENGSYRLTRP AMVDGCHGAR  660
PWRSGFAVAC ALAAGKADPK GTWPSLEENE GGEARKRVKL PADAWTHADK CDA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00686.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-30TCP family protein