PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00655.1.g00200.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 402aa    MW: 42451.7 Da    PI: 8.5765
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00655.1.g00200.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.85.3e-441062593134
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 
                                   ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s a
  Zpz_sc00655.1.g00200.1.sm.mk 106 PAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGA 186
                                   689*****************************************************************9999999999999 PP

                           TCP  83 snsssg.kaaksaakskksqksaasalnlakesr....................akarararertrekmrikn 134
                                   s++s + +aa++ ++ +++q++ a++l  +++ +                    a + +r+r+r++++ ++++
  Zpz_sc00655.1.g00200.1.sm.mk 187 SHHSGAsRAATAFHHLQPQQHDVAAMLGWNHHYQqqqqllqppppqqqapqdpgAGEFMRKRYREADDLFKDT 259
                                   98877746666666***************99888788999999999998888888888888888888887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349111165IPR017887Transcription factor TCP subgroup
PfamPF036344.7E-38111254IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDHGAAPSSS TSTSTNSSRS ASEQQQHHHH HQHQQAHQQV QHHAFYYAAA APGGAANAAA  60
AVGMAPFMGS LSIVPAAAAA GEAQAAQQAA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG  120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV  180
SLRSGASHHS GASRAATAFH HLQPQQHDVA AMLGWNHHYQ QQQQLLQPPP PQQQAPQDPG  240
AGEFMRKRYR EADDLFKDTA ARQQQQQQPD GASGADEPEE QKARALPTAM WAVAPNSSAA  300
GGAFWMQPAW AFGGGGPAAA GTVQAPLQFM STRSGGDFPG GHMADNSIGM LAALNTSVQH  360
QHQHQQDEQP QQQQPKSTMA QQQRHRAGAN GGNAGHGAAS PQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00655.1.g00200.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634321e-124BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBankKJ7268971e-124KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450404.11e-115transcription factor PCF3
RefseqXP_004978832.11e-115transcription factor PCF3
SwissprotQ53PH29e-95PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0A9G9I11e-121A0A0A9G9I1_ARUDO; Uncharacterized protein
STRINGGRMZM2G003944_P011e-119(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-46TCP family protein