PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00653.1.g00220.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 274aa    MW: 30515.8 Da    PI: 6.1673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00653.1.g00220.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-103584154
                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                    r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Zpz_sc00653.1.g00220.1.sm.mkhc 35 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPRNDKATILGDTIQMLKDL 84
                                    5677889********************997....799***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-1433104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1333107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.8173484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-73588No hitNo description
PfamPF000108.5E-83584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-74090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDLRGHQPPE DGFFTRDADP SQRMECQAQG STAARKVQKA DREKMRRDKL NEQFQELGNA  60
LDPDRPRNDK ATILGDTIQM LKDLTSQVNK LKAEYTSLSE ESRELTQEKN ELRDEKASLK  120
SDVDNLNNQY QQRMRVIYPW AGMEPSVVIG PPAPYPYPVP VHIPSGAVPM HPQMQAYPFF  180
QSETSGTIPS PYMAYTQPYH PPTYQPSNQL NTQVPHSSSH RSNSPAQDCR SKSSTLQQES  240
CGGKNSDVGD VASDLELKTP GSSAPSHSDI AKGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00653.1.g00220.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.11e-158transcription factor bHLH121
SwissprotQ9LT233e-73BH121_ARATH; Transcription factor bHLH121
TrEMBLK3YU581e-156K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-70bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]