PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00632.1.g00040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 193aa    MW: 20307.1 Da    PI: 10.5254
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00632.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.7e-3441123392
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssa 82 
                                   +k + ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a  +c   ss  s+
  Zpz_sc00632.1.g00040.1.sm.mk  41 KKPSGSKDRHSKVNGRGRRVRVPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSC---SSAPST 118
                                   5666789********************************************************999995444...222222 PP

                           TCP  83 snsssgkaak 92 
                                   s+s     ++
  Zpz_sc00632.1.g00040.1.sm.mk 119 SSS-----SR 123
                                   211.....11 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2945134IPR005333Transcription factor, TCP
PROSITE profilePS5136925.88646100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MASREHAAAT FHQVYQPTPA PMSLAALAPT DAAVAMAPAR KKPSGSKDRH SKVNGRGRRV  60
RVPIVCAARV FQLTRELGLK SDGQTVEWLL RQAEPSILAA TGSGTSPAVF SCSSAPSTSS  120
SSRSLLLGKR PRQDVDEAPP PLWAAMQARP VGVAWGLSTP AQEQAYASAA QGHCLNLLSV  180
LSGTTKPAEE ESR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00632.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674807e-77EU967480.1 Zea mays clone 303582 TCP-domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976294.14e-65transcription factor PCF1
TrEMBLA0A0A9DEW82e-82A0A0A9DEW8_ARUDO; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.15e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.14e-36TCP family protein