PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00607.1.g00210.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 329aa    MW: 35676.9 Da    PI: 12.1124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00607.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05135154221
                                   EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                   +C+ Cgk+F+++  L  H+r
  Zpz_sc00607.1.g00210.1.am.mk 135 PCTECGKRFPSWKALFGHMR 154
                                   5******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.619134161IPR007087Zinc finger, C2H2
SMARTSM003550.0034134156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.03E-9135156No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4136156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-9136158IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576674.03E-9236263No hitNo description
PROSITE profilePS501579.39241263IPR007087Zinc finger, C2H2
SMARTSM003550.58241263IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-11241265IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MHRRALHAAA AHIRGNRRDM MARAPYISAR PPPRTTSGPQ LPLHHAARRP PATSLARPWR  60
PTPCPILRSS RAQRRHLPLL RLHRRRHRYR RSTTRRSRWR XXPLPHARRP RHPPSADGAA  120
SFARVRSSPT GDTPPCTECG KRFPSWKALF GHMRCHPERQ WRGITPPPHF RVQGSTAADQ  180
FTAQEREVAT SLLMLSGAGT GKKSLLGSPR GRKESAAGTS ASSSSTTAPA AASSKCDADD  240
HKCSVCHKGF ATGQALGGHK RCHWEGASGE AVVTATSSNC SVLATSQEAT AATATALDLN  300
LAPPGTPSPR TTNDQGRSLN AVLDLKLGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751883e-43EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971620.11e-85PREDICTED: zinc finger protein ZAT3-like
TrEMBLK3XRW11e-76K3XRW1_SETIT; Uncharacterized protein
STRINGSi004657m3e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-30C2H2-like zinc finger protein