PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00606.1.g00040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 564aa    MW: 59858.2 Da    PI: 5.9241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00606.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12377422555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  Zpz_sc00606.1.g00040.1.sm.mk 377 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 422
                                   99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.58E-13370426No hitNo description
SuperFamilySSF474593.14E-17370433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.441372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16374432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9377422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAGFGAVVLR DLVEGCSVLV REQSREAPLA SIQLKSVTER EMGGFVDPFT PASAWPQDPA  60
FAGSSWSGSG ASSLADSAEL EFHLRNGSSS SPALLNGGRA NETVSPLELD EQFLQEQLQG  120
HHLTHGLMHF EVDSAMERAL MAGTLGSDLS TPCAPLLCSS NDSSGSEQSG MLQSLLGEQQ  180
VPTPAAWSSA FSQISSFVGE EPSQIFGFGL LSNADLLHEA CAPDGKKYPQ LGNAQSAPLQ  240
PHDDVKHNSG KMLSFAPGQQ LNSNFDNLQI CQKKPIIDDS AGKNHKYKVA RWQLADVEFS  300
GLHHLNLSSL VSGQLSAFNA TGSALSPKQS NEARGGIIGS TATSITLSEA PNGNVAAGNG  360
GPKPRVRARR GQATDPHSIA ERLRREKISD RMKNLQELVP NSNKTDKASM LDEIIDYVKF  420
LQLQVKVLSM SRLGATEAVV PLLTESQTQS SGLLLSPKSG RRTACGDVLE QSEHNDGAAF  480
EQEVAQLMKN NMTTAMQYLQ SKGLCLMPIA LASAISDQKG TSSAVVRPDN DGTADAGVGG  540
KGDVKKVSDV MKPFGMAKEM KSRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00606.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749563e-78EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGPavir.Aa01634.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-54LJRHL1-like 3