PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00554.1.g00070.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 428aa    MW: 44645.3 Da    PI: 5.7779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00554.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.1e-06269309954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Zpz_sc00554.1.g00070.1.am.mk 269 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 309
                                   599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-13266319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-10266314No hitNo description
Gene3DG3DSA:4.10.280.101.0E-9269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDATYGWAGA GQHVDDYFSS QVGCARFEMD DAFLGACFGQ QQCDGISGAG GDAGTCQVSS  60
NFGGTGGCPA GVDSDPLAIM SPGTGDVFDA SLLDAALAFS RELGDVCGAV SNGAMFSSYS  120
GTTGGNMSSG ESNNYSGGSH EAEVVSPTTA PPPSFPHASS EQALHPKRKV TDEYPSIITP  180
TTEPPPAMPF PRPGGGKRRA ATTSISFGRD TGERYEPDME AMAQVKEMIY RAAAMRPVIL  240
GPEVVAAAAA EKPRRKNVRI SSDPQTVAAR LRRERVSERL RVLQKLVPGG SKMDTASMLD  300
EAASYLKFLK SQVQALETLG TTTTTNSSST SRPSQQHYSY HNSSTPSFLG FARSSNISHG  360
GAGGEEERTA STSGPAGYHK AFTLVGLSDA KRHSFGGRLT DGYPDPHAMH ESLCGVTTGD  420
DCTAACAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256EKPRRKN
2251256KPRRKN
3269274RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00554.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554551e-101AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818336.11e-162transcription factor LATE FLOWERING-like
SwissprotA0A0P0WQ905e-51LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A2T7DHT31e-161A0A2T7DHT3_9POAL; Uncharacterized protein
STRINGPavir.Eb02901.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-30bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]