PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00553.1.g00170.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 289aa    MW: 30762.9 Da    PI: 7.674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00553.1.g00170.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08139183554
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Zpz_sc00553.1.g00170.1.sm.mkhc 139 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 183
                                     99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10132188No hitNo description
PROSITE profilePS5088815.77134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14136194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6139183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAGQPTPPQG PEDDFLDQFF SMAAGGSYSA AAAGGGRVAG DQPFSLALSL DAAAEASGSG  60
KRLGVAAEGG KADRDAVQLP GLFPPVFGAG LQQPHLRPNP PPQVFHAHQQ KQGGAGVGPQ  120
PPVPRPKVRA RRGQATDPHS IAERLRRERI AERMRALQEL VPNTNKTDRA AMLDEILDYV  180
KFLRLQVKVL SMSRLGGAGA VAQLVSDIPL SVKGEVSDNG SKQQIWEKWS TDGTEKQVAK  240
LMEEDIGAAM QFLQSKALCM MPISLAMAIY DTQQSQDGQP VKPEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00553.1.g00170.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.11e-171uncharacterized protein LOC100285681
SwissprotO227684e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8461e-169B6U846_MAIZE; BHLH transcription factor
STRINGGRMZM2G004356_P011e-170(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]