PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00551.1.g00160.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 377aa    MW: 40043.6 Da    PI: 7.236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00551.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12223266755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +Er RR+r+N+++  Lr+++P+      +K++Ka++ + A+ YI +Lq
  Zpz_sc00551.1.g00160.1.am.mk 223 VIERDRRRRLNEKLYALRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 266
                                   69*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16216280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-14219270No hitNo description
Gene3DG3DSA:4.10.280.104.9E-15222282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9223266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTRTGGQQPT GAAVYGRTTQ GPAPACPVLL RLRSLTGGIH PPDVLLAAHA GHQMLSALSA  60
LGVAWLELLR TPTHTSSSYS VPHKARTLSH KNMAISEQTV ASSLSAGGCD LRAACLQVRP  120
METDVLGVGF DFYWTPPPGL VLDADDLDLA GFDSCSMYMP AEAETAADST SGLCPYREGS  180
NSPDGANPSN AAAVPTASSS PPSPQPLLPL GGGGGHAASK NMVIERDRRR RLNEKLYALR  240
SVVPNITKMD KASVIRDAIA YIEKLQEEER RVLAEISVLE SSTAVQVLEA WDTMAVQQGP  300
GRRAQGVPLR LRIVTNTVAA VGDTVVHTMF GQVTPNNNYL LLTDIAGAGL AAPFRTLWLH  360
VSLSCSCLWD RRMTSTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00551.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667031e-33BT066703.1 Zea mays full-length cDNA clone ZM_BFb0053N17 mRNA, complete cds.
GenBankEU9556201e-33EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBankKJ7280261e-33KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823076.13e-55transcription factor bHLH35-like isoform X1
TrEMBLA0A0A9IMR07e-63A0A0A9IMR0_ARUDO; Uncharacterized protein
STRINGPavir.Gb02374.1.p1e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.43e-23bHLH family protein