PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00523.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 583aa    MW: 62441 Da    PI: 10.7689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00523.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087208230123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C++C + F ++  L  H++ H
  Zpz_sc00523.1.g00020.1.am.mk 208 FACHYCRRQFYSSQALGGHQNAH 230
                                   78*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-5206235No hitNo description
PROSITE profilePS5015711.136208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MQRIAIVSSV VLLASVSGLQ SAADTELVAA ANHVGEGLRV LTPTTACLLL LLLLLIRNLS  60
RLPDLRVLRE RRGWWQWSAA TASRSPLTGS AGTADRQSGD SIHILILGAQ HLPHRSRDVR  120
AETVDQAGKE GRREKRLIGG GNGHRGQLDA AKVELDLLGG MVGSVVDFHP AAVRDVADQS  180
SSLPVLLDLV PPDQPPSTAA GLDPPQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARRR  240
GEVAPRPFGG LLVQGSPTPF AVHGASLVTA PALGWVRAVM NSRAPAGGYA DRRVDGGGEE  300
LPKLDLTLKL NCAGVGLSSS RRGGAGYGAM GLALSATNAA MAAPPCVSAV SSLHSPDLFG  360
KATAPLSGRR PFLGIRSVDR TNKQTNSADR RAPPLSAPTQ AAASLTGLDA KRVKKDSLGI  420
SAEASLRVNE RDETAGGLAA PCMMDGWVEA FGTGRTDGQM RARERKKVRP REQVHAVLRA  480
ESFPWPRRNP LVNSDKALAV PSRSGWTTKR FRRQIKDAKD SNAFVTLLSF CSVPGPSFNC  540
TLYCYSSHHS PDAEADEDSA RFFFFYRAVR TAQLLRAEGN RRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8354072e-42CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.
GenBankCP0126102e-42CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149582e-42AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0040872e-42AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.19e-16zinc finger protein 2