PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00479.1.g00170.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 393aa    MW: 41801.6 Da    PI: 6.3022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00479.1.g00170.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.6e-08307348854
                                   HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   + r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Zpz_sc00479.1.g00170.1.sm.mk 307 AARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 348
                                   569******************966......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-11304357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-13304358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-11305353No hitNo description
SMARTSM003535.8E-13305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-5308348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVVSESSWSG CCDGSNGVFY GCNMSVLERL VLDEALAAAI LELQQQGIPA AARPAPKVPG  60
SGGVGDSAAF PTMATPTLEY ADVDVDVLQR QQQHRHQDAT GMAADYDLTP AKAAVVAVTS  120
AFTNFTCAAL GDGCRLGDPP VLLCGNETSI TTTASMAMTV TTTSQRCEEG RDGGGRKQRR  180
PSRKRMAADT ASAAPTQESS LYSLLASTTP GDGGIQITFS SSAPAAGNKR SKPSLSSGSS  240
SISFDGRNAG GEDPAYEPDR EALAQVKEMI YRAAAMRPVS LGSELEQASE RPHRRNVRIS  300
SDPQSVAARQ RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QVRDLQTLDR  360
RNYGDTNVNS TTMTGPMSYS NNDSIVPAFA SWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00479.1.g00170.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.11e-107transcription factor LATE FLOWERING-like
TrEMBLA0A1E5ULC61e-112A0A1E5ULC6_9POAL; Transcription factor bHLH87
STRINGPavir.Eb02113.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein