PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00479.1.g00070.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 253aa    MW: 26592.7 Da    PI: 8.6565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00479.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006878100123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C + F ++  L  H++ H
  Zpz_sc00479.1.g00070.1.sm.mk  78 FKCNYCVRKFYTSQALGGHQNAH 100
                                   89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-675105No hitNo description
PROSITE profilePS5015711.21978105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEIEAVVEVE DREEVRGREQ APAQEMDLLG AVGSEPAANV IQALEAKGKE KAMVEVEEKP  60
VTATVAGRNG GGQKRRAFKC NYCVRKFYTS QALGGHQNAH KRERSLAKRA AAAAAGRGMY  120
DGGDPFMPPQ HLRAPHAWPY YSAGGRPSFL GLGGRGSAVP FYGVHQGWAA HEGQPSVAGV  180
ARHGGADGGQ PSAPHAYGYA ASSRMTPAPT ILDSGMAGLR WTGGVARGST GDHGVAHEVK  240
QESDGTIDLN LKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454977.17e-67hypothetical protein SORBIDRAFT_03g002440
TrEMBLK3YL488e-75K3YL48_SETIT; Uncharacterized protein
STRINGSi014969m2e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.19e-16zinc-finger protein 1