PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00471.1.g00160.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 264aa    MW: 28476.2 Da    PI: 8.848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00471.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09132179455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                      h +rEr RR+r+ ++f+ L  llP+ a      K  K +i+  A  YIk+L+
  Zpz_sc00471.1.g00160.1.sm.mkhc 132 RHIMRERLRRERLSQGFADLHALLPPgA-----SKGGKNDIVGAAAGYIKELE 179
                                     599***********************66.....7888999**********995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-14127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-12128199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.805128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-5134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MANGTAPYTH GSPAMDPFYF DLQDAIIDID DVDYLTSLGD AVTLPPAPGS AFAAYQEGTS  60
LEPLTMSRGG GRCSSSGGAN VHRRMFRHLR RIGDAAAAAA SAGNVVAGAD PEPSHRAGAE  120
TSQAPRGSTR FRHIMRERLR RERLSQGFAD LHALLPPGAS KGGKNDIVGA AAGYIKELEG  180
RKRRLSARND ALIEQVARTG SSMVVNVRAE IEQHSVAVDV FEMVLQRLKA MEELRMTGIR  240
SCFDGGGMWM NVAVHCWQVV RRQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00471.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488634e-42EU948863.1 Zea mays clone 388069 mRNA sequence.
GenBankKJ7280304e-42KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.15e-68transcription factor BHLH148
TrEMBLA0A1E5VF497e-69A0A1E5VF49_9POAL; Uncharacterized protein
STRINGSi002320m2e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432