PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00449.1.g00070.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 235aa    MW: 24828.3 Da    PI: 4.343
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00449.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41e-22153197145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  Zpz_sc00449.1.g00070.1.sm.mkhc 153 EPEPGRCRRTDGKKWRCWRSTIQNEKYCERHMHRGRKRPVQLVVE 197
                                     69************************************9998875 PP

2QLQ53.57.1e-1987122237
                             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                     aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Zpz_sc00449.1.g00070.1.sm.mkhc  87 AFTAMQLQELEQQSRVYQYMAARVPVPTHLIFPIWK 122
                                     8*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-886122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.88887122IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.4E-1287121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.049153197IPR014977WRC domain
PfamPF088792.1E-19154192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAAEGEAANP AGGGSGGDSY PQEVVAAADE AAQGSGQEPA GEMANREGAD GGDGGGAEEK  60
DDGAYGDLVL VEGPEALAVE GLDKGAAFTA MQLQELEQQS RVYQYMAARV PVPTHLIFPI  120
WKNVTGASSE GAQKYPTLMG LATLCLDFGE DPEPEPGRCR RTDGKKWRCW RSTIQNEKYC  180
ERHMHRGRKR PVQLVVEDDE PDSASGSKTT PGKADDKSAN NMKLDVAAPA SVEST
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00449.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800926.11e-113growth-regulating factor 11-like
SwissprotA5HEG91e-110GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A2S3H2A31e-111A0A2S3H2A3_9POAL; Uncharacterized protein
STRINGSi030809m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]