PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00443.1.g00120.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 171aa    MW: 18894.6 Da    PI: 8.8402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00443.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-1215106199
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ffk l     ++++ l+lp kfa   g    ++ t++l +e     W+v+l    ++++++l++GW++ ++  +L eg  +
  Zpz_sc00443.1.g00120.1.sm.mk  15 FFKLL--LPGMAKNELRLPAKFAGVLGDR--RDLTVRLSSEGAmPLWDVEL--VTSGDGVYLGRGWRQLARTYDLGEGHLL 89 
                                   78888..67788888********666655..777999999655599*****..999999********************** PP

                                   EEEE-SSSEE..EEEEE-S CS
                            B3  81 vFkldgrsefelvvkvfrk 99 
                                   vF++d+   + l+v+vf+ 
  Zpz_sc00443.1.g00120.1.sm.mk  90 VFRYDN--AAVLNVTVFDP 106
                                   ***975..66679999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.67413107IPR003340B3 DNA binding domain
CDDcd100177.29E-1313105No hitNo description
Gene3DG3DSA:2.40.330.101.5E-1714109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1814109IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-915105IPR003340B3 DNA binding domain
SMARTSM010196.5E-1015107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEQGIADLPK AEFEFFKLLL PGMAKNELRL PAKFAGVLGD RRDLTVRLSS EGAMPLWDVE  60
LVTSGDGVYL GRGWRQLART YDLGEGHLLV FRYDNAAVLN VTVFDPSTCR KQYPRAGGAG  120
SAGAGRNAPH VNEPAHFAVT LRNCNLSTKQ NQYLVSEHCH RLGILAWRSL I
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00443.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.12e-48B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.12e-48B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q263e-38Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID04e-62A0A0A9SID0_ARUDO; Uncharacterized protein
STRINGPavir.Ia04671.1.p2e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.13e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]