PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00435.1.g00080.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 480aa    MW: 53491.4 Da    PI: 4.8147
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00435.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35361272102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+
  Zpz_sc00435.1.g00080.1.am.mk  36 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 107
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ll++i+r+k 
  Zpz_sc00435.1.g00080.1.am.mk 108 NEDFIRGHTHLLKNIHRRKP 127
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.72E-3631125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6232125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3932125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.5E-203659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLPGKERESE TEAAGMEGSQ SRSGGGGGGS SSPPPFLIKT YEMVEDPATN HVVSWGPGGA  60
SFVVWNPPDF SQELLPKYFK HNNFSSFIRQ LNTYGFRKID PERWEFANED FIRGHTHLLK  120
NIHRRKPVHS HSVQNQVNAL AESERREYED EINRLKYEKS LLLADLQKQD QQRCLTNWQM  180
QSLEDRLMQM EQRQKNIVAS LCDILQRNGA VSSPLSLQTD HFNFSKKRRV PKIGFFADDD  240
AAVEEERQAS FLQMMGAVPK SPSVFPVQQH PVNAEPFDRM ETSLVSLEKF IQRASDADAS  300
PQDMFAIADA PSLAVALGEV QSAPMETGIN LQSSTGQVHS SAGFAESSCY ASSPMLPLAD  360
LREDAPRTAK VDINSDTTST DTSQDEATTE TGGSLSQEPA KVNDVFWERF LTETPKFGRA  420
GEADSGRQED ECKSEPAEVK EDEKVAVDCS SLHRYKVVDQ ITEQMGQLAS AEYAVPHHLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252412517129Heat shock factor protein 1
5d5v_B1e-252412517129Heat shock factor protein 1
5d5v_D1e-252412517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00435.1.g00080.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810280.10.0heat stress transcription factor A-4d-like
RefseqXP_025810281.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-168HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2S3HA790.0A0A2S3HA79_9POAL; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-66heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]