PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00412.1.g00090.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 340aa    MW: 36431.6 Da    PI: 6.6233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00412.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019156178123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +Cg++F r  +L  H r H
  Zpz_sc00412.1.g00090.1.sm.mk 156 HKCDICGRVFARGVQLGGHKRAH 178
                                   79**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-6152183No hitNo description
PfamPF139121.6E-8156180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-5156182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.487156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDPSSSSSRR HRRGADGDAE DIEEGEYVPG EPSSSSDTDG DFHRYSLQSR PRAGETGPPQ  60
PSRTLEEIYA KGKEVMPPSP SPSSVGETDD TISDAFGRCN LPFLVPARTN RDNSAERSSP  120
PSVQNEPATS VANSSNNIAK PAARKKKMQL MQEQGHKCDI CGRVFARGVQ LGGHKRAHYG  180
KKIEYKKRKK QCVEPPPQLV DPPAPLAAPA TAVCMTDLTR SMDMQTGQPS HSSPPPQVVA  240
PPAPLASPAA VCMVDPTGNQ TEQPSDSSPQ PAVTILRLFG TNIMPGAPAV QEGNGIMPQA  300
EAPEEGSGAT EDLPSTRRQS LNIYHAYGFC LRKVQITQDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3321934