PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00408.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 91aa    MW: 9967.35 Da    PI: 7.3645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00408.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-0921581554
                                  HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                  +iN+  ++L+ llP+ +   +s ++  a++L++++ YI+sL
  Zpz_sc00408.1.g00040.1.am.mk 21 QINDLVAKLQALLPElR---SSDRVPSAMVLQETCSYIRSL 58
                                  8**************66...99*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00181764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-102077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-62062No hitNo description
Gene3DG3DSA:4.10.280.106.5E-92072IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-62158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRPRSRA SGGAARISDE QINDLVAKLQ ALLPELRSSD RVPSAMVLQE TCSYIRSLHR  60
EVDDLSDRLS ELLATSDVSA AQAAIIRSLL M
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00408.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8365893e-65CT836589.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z79, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389574.13e-41PREDICTED: transcription factor ILI6-like
SwissprotA2Z7301e-36ILI7_ORYSI; Transcription factor ILI7
SwissprotQ338G61e-36ILI7_ORYSJ; Transcription factor ILI7
TrEMBLM0S5Y27e-40M0S5Y2_MUSAM; Uncharacterized protein
STRINGPavir.Ia01776.1.p1e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-31bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]