PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00385.1.g00190.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 355aa    MW: 38635.1 Da    PI: 7.112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00385.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08228270855
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + r RR+ri ++ +eL +l+P       ++ls ae+L +A +Y+k Lq
  Zpz_sc00385.1.g00190.1.am.mk 228 AARERRRRISQKTAELSRLIPGG-----QRLSTAEMLHEAARYVKLLQ 270
                                   56899999*************96.....7****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-10225278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.51E-8226273No hitNo description
SMARTSM003531.4E-8226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-8226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5229270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRFEPSRKAE EATRHWRFHE MRKSIQGAGR ERAAAASTLQ GAVTVNPWLR PPPITAPLSS  60
PVKRARSISA SNHPAMALSF HPTPAPGAAD MTSFLHDAHP DVSDDGLLGF VYDVPLNAVL  120
DDFLDLPSLN AAAFTTGPVS DDAAAFLGPL ENEFLTTECL EPAQHCDKNL RTACDYQQEP  180
AAMPEFAAEF VMAPLPPPLP LPQPRTFARG SADAKIEPRG NVGHQSVAAR ERRRRISQKT  240
AELSRLIPGG QRLSTAEMLH EAARYVKLLQ AQVGLLALMH TVDSSENEKT PAVMATREQM  300
HALLVSGSVQ ERLAAEGKCL VPRKLVDAVA KDKAVKSNPL LNRDLARFMA SLEQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00385.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.15e-75uncharacterized protein LOC101765829
TrEMBLA0A3L6S6L13e-77A0A3L6S6L1_PANMI; Uncharacterized protein
STRINGPavir.Ia04589.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-26bHLH family protein