PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00310.1.g00300.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 206aa    MW: 23221.8 Da    PI: 5.5758
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00310.1.g00300.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35321232102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zpz_sc00310.1.g00300.1.am.mk  32 FLTKTYQLVDDPCTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFA 103
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F+kg k+ll +i+r+ks
  Zpz_sc00310.1.g00300.1.am.mk 104 NEFFRKGAKHLLAEIHRRKS 123
                                   ******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-5828121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3729121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.99E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAFQLVERCG EMVVSTMESS AHAKPAPVPA PFLTKTYQLV DDPCTDHIVS WGDDDTTFVV  60
WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVADRW EFANEFFRKG AKHLLAEIHR  120
RKSPSSTAAA HSPQLPASAG RVASSCRLME LDPDSSSPPP RPEDTDGTVK LFGVALQGTK  180
KRQHREDEDE DDDDHDQGFR EGTSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-232312612125Heat shock factor protein 1
5d5u_B2e-232312121129Heat shock factor protein 1
5d5v_B2e-232312121129Heat shock factor protein 1
5d5v_D2e-232312121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00310.1.g00300.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541481e-139BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658884.13e-79PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ01e-74HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2T7EZ902e-76A0A2T7EZ90_9POAL; Uncharacterized protein
STRINGPavir.J32257.1.p2e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-67heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]