PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00304.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 585aa    MW: 64257.6 Da    PI: 7.1522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00304.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13274321355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+L+
  Zpz_sc00304.1.g00040.1.am.mk 274 KNHVMSERRRREKLNEMFLILKSLVPTiH------KVDKASILAETIAYLKQLE 321
                                   5899***********************66......*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-17288IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.897271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-15274325No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17275330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11275321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-17275333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-16277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MQRSEQLREL YETLLSGGRD HRAARPVAAL SPEDLGDTEW YYVVCMTYAF RPGQGLPGRS  60
FTCNEHVWLC NAHLADSKTF PRALLAKVRE DPDLVRLVTE SFWERQLPAC TEEPCSRPPA  120
NGTGDADITT VFEDLDHNAM ETMITSRGQE FGAVGILSSA SLEHAANEID ELYSLCDELG  180
VDDWIMEGPF EVPCSPKAVA PGPGDTDDAG NVAMPVDRMT SFMAWRGPDS SGAAVPVIGE  240
PQKLLKKVVA GGAWENSSGA GGNSTRSTQE CGIKNHVMSE RRRREKLNEM FLILKSLVPT  300
IHKVDKASIL AETIAYLKQL ERRVEELEST DKDEHMTQPS ETRPSGRHSN GGVEKRVSGS  360
KRKKAFKLSD DTEREHHWVR SKDGTSNVTV TVTDKDVLLE VHCQWEELLV TRVFDAMKTL  420
HLDVLSVQAS TQDGFMGLKI RAQRNGPAKP EGAKQRSPCG DSRDIFAARD DVSFFIQRKA  480
KRYLTAARLS STFLLPCFPV YPQFARTRLG SSSAPRRSTC GRRPCSLGLI ARPLRPVFDT  540
SAATGAAAAS AGSQPVSGFR SGRAGRHLVA RILDAPLAVE RSSES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284ERRRRE
2280285RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00304.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423111e-49AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823475.10.0anthocyanin regulatory R-S protein-like isoform X2
SwissprotP130271e-151ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A2T7CYI50.0A0A2T7CYI5_9POAL; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-40bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]