PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00286.1.g00240.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 252aa    MW: 27268.8 Da    PI: 6.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00286.1.g00240.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-1176123454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     ++  rE+ RRdr+N++f eL +++ +    +  Kl+Ka iL  A + + +L
  Zpz_sc00286.1.g00240.1.sm.mkhc  76 SKACREKMRRDRLNDRFLELCSVINPG---KEAKLDKANILSDAARMLAHL 123
                                     6789**********************9...9****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-1465139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.83972123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-875128No hitNo description
PfamPF000101.7E-876123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1277145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-778129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMHDGGGAGD PVEDLLIIGD GDGDDGDLAI FCHGVPALAG DAGLGIEDDS GDAYGLEQTN  60
LGKRGRDEPS SSGPKSKACR EKMRRDRLND RFLELCSVIN PGKEAKLDKA NILSDAARML  120
AHLRGEAQKL KESNEKLRET IKDLKAEKNE LRDEKVSLKA EKERLEQQVK GMSAAPTGFV  180
PHLPHPTAFH PATHPTAFHP TTFAPFATQH QAPANKSASI PTAAFPGIAM WQWLPPTVMD  240
TTQDPKLWPP NA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00286.1.g00240.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0963011e-150FP096301.1 Phyllostachys edulis cDNA clone: bphylf057b18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810276.11e-125transcription factor ILR3-like
TrEMBLA0A1E5VID61e-128A0A1E5VID6_9POAL; Transcription factor ILR3
STRINGSi018232m1e-123(Setaria italica)
STRINGSb04g001200.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-58bHLH family protein