PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00276.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 1112aa    MW: 120580 Da    PI: 10.4944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00276.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000797417623455
                                   TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  34 pskKlsKaeiLekAveYIksLq 55 
                                   +++  +Ka++L ++++Y+k+Lq
  Zpz_sc00276.1.g00030.1.am.mk 741 QGESTDKASMLDEVIDYLKQLQ 762
                                   56669****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.96E-4737766No hitNo description
SuperFamilySSF474591.31E-5742785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-4744770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MENGSARYMA RRIILTDSHL ASRRPPPLPR PRRIGQLLDG QRITSSSSPA WFRPWLTSES  60
GKNDEVESRF SGSRKGCAHP ARANWRKTTI PVSSAPKLEP GRGMDDLGCG SFISARRSFE  120
KWWLAQRTAV AQLRRPVVEV PISGSHLADD GEIFKRGFKR DACRGWLSMV MMVRNLAMRM  180
CLVCFAGEMF YVCVYERWLG TKLTCVCEME FQQPGGEHVL EVGGLCGSLV AGSSGSTRAR  240
PASRTRGRVF LRSECRRAEA WEFVHAWLAR DVGGLASGAV WPRAKDEVRL EFLDLLRLRY  300
MWHVEGLSTD RAAWQAAKFW ELYQGPGATN QRPAKMNRPK SPPRHYSMAI DLTDTGRENR  360
STPARRALKL LRPCKNPQSC GSRGGYVPAS ASQARGPSLP RLPPCRHSRG PPPPPIRTPA  420
SAIERAISNR SMVISRAHPS LLKCPRPPRV PRARNGTSTR ALLVHTLACR ARPSLPAHAG  480
VVPPSATSHV IGRGGGVEMN QCVPSWDLDD PAAGSVPINK VSAAAGAYHR AAVAGAGDSL  540
SPLVVPMSDQ YYEGSISSHG LLNRPTPKYP PAAPSHQLQA IGGGGDGGSG DHETLEAVVG  600
EAATRSHFPQ PSFPATPWLG VGVPLHADAL VPCARNEQAA GEETPRKRAR VVGDGGLVCT  660
SQGSVASGRR GESAMHALDA ACGTDVCGFT TTTNNSTSLD REENKGSPDT ENTSIGGGAK  720
TKGQDQPEDE NSTKAGPKLK QGESTDKASM LDEVIDYLKQ LQAQVQVMSR MSSMMMPMAM  780
PQLQMSVMAQ MAQMAQMAQM AQGMMNMGSL AQPGYVPPPF VPLPWDAGGD RAARPGGSAM  840
ADAFATFLAC QQAQQNGQVR VQAQMIIHIR VFEFMCDARN CTQIKDGAQA LLNQCLCSLN  900
RLGGSRPLGR QSRGRNAHSS AAAPIRHPDS GGDHARDDDE SSEPARIKSR ASWSSRRDTW  960
PAAIGDLLTP AGIGAMQPHM PRNAGRQLDP RIKRREARQR RGQADTGGRK RRVGKKPDVM  1020
VSANKPLPEE MGRAFGRTPL SKDAGLQLCN ALFDWRLSPG RGRLASERRR HSEKLAVSMR  1080
AGMNRVQLAM PFPCSAEMLD QPSPIHELKA VI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19921011KRREARQRRGQADTGGRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00276.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614208e-65AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678148e-65AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-06bHLH family protein