PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00264.1.g00260.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 404aa    MW: 42758.6 Da    PI: 5.9936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00264.1.g00260.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13197243354
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  Zpz_sc00264.1.g00260.1.sm.mkhc 197 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 243
                                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11197243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15198264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15198265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-5207246No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-5281328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGGHGHRHRH QEVCVLVDDE GEELEQHGGR ACGGATSGVV EQGVGDGGRG LEAAGMVFEA  60
SSSVGSVSAT MAPSQILGWP PPEQPPQQPI HHHHSIGGGQ SPFFPLLPPQ PPHPPPPFFA  120
DFYARRALQF AYDHSGGGPS SSSDPLGLGG LYMGHHHGGS PVSGMMMPPS FGSSPFGDFG  180
RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA SLLAEVIQHV  240
KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRPDL LPDLIRALKA  300
LRLRALKAEI TTLGGRVKNV LFVTGDDSAG CPGGDGDDEQ QDQPQAPMSP QHTVASIQDA  360
LRAVMERTAS SAAEEPGAAS SGGGLKRQRT TSLSAILENS ASHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00264.1.g00260.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649780.11e-174PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y18e-78BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1E5UY760.0A0A1E5UY76_9POAL; Transcription factor bHLH30
STRINGOB03G21490.11e-173(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]