PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00254.1.g00320.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 587aa    MW: 61047 Da    PI: 9.3889
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00254.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-39261385289
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eae 76 
                                   +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++         
  Zpz_sc00254.1.g00320.1.am.mk 261 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStlnlpmR-- 339
                                   5789************************************************************999998885433221.. PP

                           TCP  77 sssssasnsssg....................................k 89 
                                        a+++s++                                    +
  Zpz_sc00254.1.g00320.1.am.mk 340 ---AGAGANSARaapfqalalhphqqhdmsammgyhhllppqqqepspQ 385
                                   ...2222222221222223333333333332333322222222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-36267400IPR005333Transcription factor, TCP
PROSITE profilePS5136928.333267321IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MLPGLTPRTC GVPRPHQFPT HPRKATAARA LLPSLAAHAR SLARFLHPSP LSFLHATPPG  60
PATHPCPCLR PLLSPPRPRL AALRSLSLLP AAPPRPPRRL PPPSCVPGTC SYHRLPPHRV  120
TPPPEAKGAA FPFRSVSSVK GKALWPSLAA TRPSRGRTMD HGGGGGAPSS SNSAGASAGG  180
GGTSGSRGGE PQQHPHHAFY YTGPAAPAGS NSGVPPPPPS QQQASPFAGA LAITPVPAGD  240
QAQPSADKKA VVAAAPAAAG TVAKRPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  300
KSDGETIEWL LQQAEPAIVA ATGTGTIPAN FSTLNLPMRA GAGANSARAA PFQALALHPH  360
QQHDMSAMMG YHHLLPPQQQ EPSPQDSNPS ASYMRKRYRE DLFKEDDDDD RQDPSAPKAR  420
EQHHQQQAAS STPQAPSAAM WAMAPNTAAP GAGAFWMVPV SATSAAAARP AEPQPMWSFG  480
AGSGAVQAPL QFMSRATYPP GGTGGSGVSD TNLGVFGAAH PYNRGASADQ QQTQTEQQGG  540
GDRGAEDEEE GDDDSGEEDN GNNNGNGSGS QQASLQETKP LPMEEDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00254.1.g00320.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836911e-104BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBankKJ7269511e-104KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808168.11e-118transcription factor PCF3-like
TrEMBLA0A3L6T4N81e-129A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRINGGRMZM2G089638_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-40TCP family protein