PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00242.1.g00250.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 417aa    MW: 42961.9 Da    PI: 6.614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00242.1.g00250.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11205248855
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    Er+RR+++++ ++ L  llP +     +K +K +i+ +Av+YIk L+
  Zpz_sc00242.1.g00250.1.sm.mk 205 TERKRRKKMKNMYSSLHLLLPRL----PEKADKTTIVGEAVDYIKTLE 248
                                   7*********************6....39****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.862197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13200260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-13202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-11202252No hitNo description
SMARTSM003538.0E-7203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8205248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSRPDANLPM KDVEGSSPGG VGSAGTSGSG SKPASPAINP FQDVRGTHDD EISPDEAMPA  60
VEGLAAMAGS DSNSLKLALA LAGEDSNGGS KPASPLAAQA HAGDVSGSKP AIPAALQVSA  120
GGASDKGKGK DELAGGEGAG DDVAGDSDGV TGSTSKSTKS SSDGDVQGDV VKDAPTPAVG  180
GSGGKSKGKG KDAVAEGDHA LHIWTERKRR KKMKNMYSSL HLLLPRLPEK ADKTTIVGEA  240
VDYIKTLERT LHNLQNLKLE RSRAEQHGAG SSRAAPPPPM RHGVGAPPVR PASRETVLAG  300
MVVSNWNAQQ AAAAASPPHE PFQSWTAPNI SVSVSGNDGF ISVCMPRQPG AVTKALYVLE  360
KYRIDVITMN ILSDQNRSIF TINTTLNQAT GNIALELTTA EDRYKLAVSE LLQWTAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00242.1.g00250.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684253.11e-56uncharacterized protein LOC111257954
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-35bHLH family protein