PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00239.1.g00180.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 434aa    MW: 44202.7 Da    PI: 7.3051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00239.1.g00180.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11217260855
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    Er RR+++++ +++L + lP +     +K +Ka+i+++A +YIk L+
  Zpz_sc00239.1.g00180.1.sm.mk 217 TERDRRKKMRTLYSTLHSFLPRL----PEKADKATIVKEAADYIKTLE 260
                                   6*********************6....39****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.148209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13212270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.87E-10214260No hitNo description
Gene3DG3DSA:4.10.280.105.6E-12214268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8217260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSQQGANLSQ DVEGSLPGGA GSEGTAGSGS SSAKQAVEII SSGWKPASPV INLPQEVQGT  60
HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASPLEVQ AGDKTAGSKL  120
PSPVVGLVAH AGEPARPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV  180
QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP  240
EKADKATIVK EAADYIKTLE GTVHMLEKLK LERLKVAQLL GAGSKSSRRA AAPPPPMRHG  300
GGAAPAPAPA NMGTISWNVP QATAAPPPPP PPQVRPLQTW SLPNITVSVA GNEAFFALSA  360
PRQQAAVSKA LFVLDKFCID VLTLHVSSDQ TRCSLTIHTC LNAAAGNVAL ELMTAETRYE  420
LAASELARWI NNAQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00239.1.g00180.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-21bHLH family protein